musaline::AffineAligner< CostCalc > Member List

This is the complete list of members for musaline::AffineAligner< CostCalc >, including all inherited members.

AffineAligner(CostCalculator ccal=CostCalculator())	musaline::AffineAligner< CostCalc >	inline
CostCalculator typedef (defined in musaline::AffineAligner< CostCalc >)	musaline::AffineAligner< CostCalc >
cut_one_begin_off_align(Sequence0 const &seq0, Sequence1 const &seq1) const	musaline::AffineAligner< CostCalc >
cut_one_end_off_align(Sequence0 const &seq0, Sequence1 const &seq1) const	musaline::AffineAligner< CostCalc >
end_align(Sequence0 const &seq0, Sequence1 const &seq1) const	musaline::AffineAligner< CostCalc >
get_cost_calculator() const	musaline::AffineAligner< CostCalc >	inline
global_align(Sequence0 const &seq0, Sequence1 const &seq1) const	musaline::AffineAligner< CostCalc >
initial_align(Sequence0 const &seq0, Sequence1 const &seq1) const	musaline::AffineAligner< CostCalc >
inside_align(Sequence0 const &seq0, Sequence1 const &seq1) const	musaline::AffineAligner< CostCalc >
partial_align(Sequence0 const &seq0, Sequence1 const &seq1) const	musaline::AffineAligner< CostCalc >
semi_align(Sequence0 const &seq0, Sequence1 const &seq1) const	musaline::AffineAligner< CostCalc >
set_cost_calculator(CostCalculator ccal)	musaline::AffineAligner< CostCalc >	inline